Split PacBio bax.h5 files
Hi,
I have a set of 21 bax.h5 files (7 smrt cells) and I was wondering whether someone knows if it is possible to split these bax.h5 files (so lets say I want 84 bax.h5 files instead of 21). This for downstream processing where we run into memory problems.
Thanks..
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Piping samtools to R
written by noodle
-
TCGA Mutation Annotation Files (MAFs) with ref_context column
written by Alejandro Jimenez Sanchez
-
Using CIGAR match operators
written by mikhail.shugay
-
Human genome gap file
written by win
-
Access Hash With 250M Entries
written by diviya.smith •
-
Cell Type Composition In A Tissue Based On Gene Marker Expression
written by k.nirmalraman
-
Convert Dosage Files To Bed Files
written by hubStar •
-
Fastq Splitter For Paired End Reads
written by Geparada
-
Demultiplex Illumina With Barcodes On Identifier Line
written by Israel Barrantes
-
Split Super Large Files
written by Bioscientist
I do not know if you can directly split the bax files, but you should be able to covert them to fasta/fastq using pbh5tools and then split. Downstream processing tools should be able to accept fastq/fasta files.
Because the .bax files are associated with .bas files, its complicated to split the files.