Longitudinal Genome wide association study
Hi,
I need to fit a longitudinal linear mixed model for GWAS in a data set that contains both family and individual information.
What is the best software?
Thank you.
genome-wide
longitudinal
snp
• 224 views
•
link
updated
by
Ram
•
written
by
lili.shafighi •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Proteomics differential expression in longitudinal data
written by fnepo •Hello! I am working with longitudinal peptidomics data and would appreciate some advice on the most appropriate statistical approach. I have previously worked with standard …
-
Getting confused with population structure in GWAS
written by Zhitian Wu •Hello. I am currently learning how to conduct GWAS analysis. My question is about **population structure** in GWAS population. For example, the phenotype in a …
-
What is the difference between covariate with fixed effect and random effect?
written by Star:) •Hi everyone, I am really confused about some concepts. I am reading papers on the subjects of mixed linear model for GWAS and variance components. …
-
Mixed Linear Model and GWAS study
written by KumarHi all, I have a set of 82 VCFs files, I merged these all into one as a genotype file and a phenotype of five …
-
Linear mixed effect model with plink bfile dataset
written by ruyu.s •I have a WGS result (in plink bfile format) and a longitudinal phenotype of interests. I am confused about how to fit the WGS data …
-
Linear mixed model and GWAS analysis
written by setaDear all, I would like to test the possible association of a set of SNPs located on a given gene with a quantitative trait that …
-
GWAS on a twin sample
written by javadjamshidi •Hi everyone, I want to conduct a GWAS on a twin sample, I was wondering if there is a method to conduct the GWAS on …
-
Gene environment interaction model with genetic relation matrix (GRM) as a random covariate
written by alioniya •I'm performing GWAS analysis with binary phenotype. In my cohort there are related individuals, which we don't want to exclude. To adjust for population substructure, …
-
Pedigree selection from a huge family based data.
written by lili.shafighi •Dear all, I need to select pedigrees from a huge family based data such that two related subject in the pedigree have experienced an event(e.g …
-
DESeq2: can I correct for relatedness when using data from multiplex families?
written by alesssiaHi All I'm trying to perform a differential expression analysis using DESeq2. The dataset under study is composed by families (mostly sibling) and I wonder …