thanks for your timely answer.
• 0 views
•
link
when I download human refseq gene table from UCSC table download, there are two columns (cdsstartstat, cdsendstat) with values from {'none','unk','incmpl','cmpl'}. What do these values mean?
It's explained in hgc.c https://github.com/ucscGenomeBrowser/kent/blob/ae4aa88945e566f60c950226ab06cbd2ee749789/src/hg/hgc/hgc.c#L2443
void printCdsStatus(enum cdsStatus cdsStatus)
/* print a description of a genePred cds status */
{
switch (cdsStatus)
{
case cdsNone: /* "none" - No CDS (non-coding) */
printf("none (non-coding)<br>\n");
break;
case cdsUnknown: /* "unk" - CDS is unknown (coding, but not known) */
printf("unknown (coding, but not known)<br>\n");
break;
case cdsIncomplete: /* "incmpl" - CDS is not complete at this end */
printf("<em>not</em> complete<br>\n");
break;
case cdsComplete: /* "cmpl" - CDS is complete at this end */
printf("complete<br>\n");
break;
}
}
thanks for your timely answer.
http://lmgtfy.com/?q=cdsStartStat&l=1
Answer from UCSC support forum (2010):
thanks for your timely answer.
Log in to answer this question.