Hello,

I have a set of vcf files created by aligning reads to a reference and then creating a smalls pileup. Now, I would like to create a fasta file for each vcf file but instead of using the ambiguity codes I would like to take the major variant in the case of multiple options. Which software could I use to do that?

Thanks in advance

PS.: If somebody knows where the information about variant abundance in vcf is, please tell me as I could then write a script solving the problem described above.