How to retrieve TSS200 and TSS1500 from DNA Methylation data?

Hello,

I'm looking for a way to retrieve the TSS200 and TSS1500 promoters regions for a set of genes from a dna methylation data,

Do you suggest any way to do so?

Cheers,

dna-methylation

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updated 3.8 years ago by Ram 4.5K • | written 11.2 years ago by Zakaria Benmounah 5

Have you tried bedtools flank, or the promoter() and related functions in the R GenomicFeatures package?

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updated 3.8 years ago by Ram 4.5K • | written 11.2 years ago by Devon Ryan 10K

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