Following on from some advice I received [in a previous post][1], I've attempted to use `GraphAligner` and `vg surject` to map long reads to the …

Previously, I have recommended two powered online tools for genomic analysis and data visualization [here](https://www.biostars.org/p/9481223/). I want to share with you other handy tools that …

NOTE: This collection was originally posted at SeqAnswers.com. Creating a copy here to preserve the information. **Part I is available here**: https://www.biostars.org/p/483592/ **Part II is …

**Answered by Michael Love on bioconductor** - **[Bioconductor link][1]** Hi, I am using DESeq2 v1.22.2 to test for changes in tumors over time pre and …

Hello everyone, I am doing the gene co-expression network using WGCNA, and want to export the network to Cytoscape so that I can see modules …

**Disclaimer 1: I also posted this in the [EBSeq google group][1], but it does not seem to attract much attention.** **Disclaimer 2: this is a …

Hi all, As a result of some very interesting discussions [in this thread][1], I thought it might be fun to write a fastq precompressor that …

<p>Hello,</p> <p>I'm still rather new to blast+ and I'm trying to get an implemented tool to work locally(that already works somewhere else). The tool just …

<p>This is a very long question. But hopefully some of you will find it interesting.</p> <p><strong>BACKGROUND</strong> </p> <p>I was given several hundred <a href='http://samtools.sourceforge.net/SAM1.pdf'>BAM</a> files …

<p>Hi,</p> <p>If anyone has run CNVnator before for cnv detection can you give me an idea of the approximate run time for the steps?</p> <p>I'm …