I have protein ids from refseq NCBI database. I want the corresponding uniprot ids through command line tool. Please help me to get the code. …

Hi all, I am trying to download the protein fasta sequence of "HSP listeria monocytogenes" from NCBI. Please suggest how I can download these all …

Hello, I have a database which contains Taxonomy and Taxon ID for each Accession Number. The database already has millions of accession numbers and their …

I need to carryout multiple sequence alignment using clustalw command line. I have been using the following command line which works fine. `clustalw -infile=test.fasta -align …

Recently I installed BLAST for command line on Windows (see code below), and this works. However, when I restart the command-line prompt, the command blastn …

I am creating a local blast database using blast+ command line tool ,is there any command so that i can search for a sequence in …

Is it possible to rename an existing BLAST database using the NCBI command line tools?

Hello, I'm just learning how to use blast from the command line. I used blastn to search contigs in our genome assembly against a local …

Hello all, I am trying to retrieve sequences from NCBI nr database. Using following command. blastdbcmd -entry 'all' -db Path/to/db -outfmt '%f' -out output.fasta It …

<p>I want to align 2 sequences using ncbi blast command line or bioperl script, I am new to blast and I found out that it …