bigwig conversion error

I have a question regarding the IGV and bigwig conversion that maybe I can get help here. I am trying to convert a .bam file to bigwig with mouse genome (mm10) to visualize the reads and I am getting this error:

hashMustFindVal: 'GL456210.1' not found

and this is my command:

wigToBigWig -clip mm10.chrom.sizes ./control1.bw

I already found out that I need to convert the chromosome Ids to UCSC. I want to know is this common to convert the IDs from ENSEMBLE to UCSC for bigwig conversion?

Thanks in advance,
Rahel

bigwig igv rna-seq

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updated 3.6 years ago by Ram

• written 11.2 years ago by rahel14350 •

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