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XML package for R in linux

Dear all,

I am trying to work with with "Cmonkey" method.

It requires package "devtools" to be installed first. Devtools have some requirements before installation. XML is one of its prerequisites.

I cannot find linux version of XML.

Can anyone help me find it?

Thank you in advance

Nazanin

xml devtools linux r cmonkey

Hello nazaninhoseinkhan!

We believe that this post does not fit the main topic of this site.

not bioinformatics related

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

Hi,

First of all thank you for your useful site.

A few minutes after submitting my post I received a very useful guide. I have also observed the similar questions related to R packages installation before in Biostars. Do you believe that questions about R is not related to Bioinformatics?

Regards
Nazanin

I'm trying to work with cmonkey myself, having several issues running the R package and though it runs with no visible errors, the only output I'm getting in the organism's folder is a text file with the text

Logging all output to /Users/username/output/hpy/biclust.log.001.txt

I'm using the package on this site: http://baliga.systemsbiology.net/drupal/?q=node/38. Any help, including some better distribution or whatever, would be very much appreciated!

1 answer

Just install libxml2-dev firstly

sudo apt-get install libxml2-dev

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