aligning multiple fasta files
2 answers
You can definitely align multiple FASTQ files to a reference genome - I do it all the time. You'd ideally be able to pass as parameters pairs of PE fastq files and any number of SE fastq files. Check out the documentation of the alignment program you're using to figure out the exact method to pass multiple files.
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Hey Hi Sarah,
There is a tool called fasta genome search or you can use blast there is a blast for searching a given database or sequence you can use that also.
Thank you
I'm sorry, but how is this relevant to the question?
Hey Ram, yes you are right I also did not give him.