how to align many single end fastq files from the same study on each other without using any reference genome using python?
I have many single end fastq files that I downloaded from SRA data base I want to align these files on each other to make a consensus genome that I will consider it as my reference genome how can I make this alignment by using python?
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GenoMax
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FadyNabil •
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FadyNabil •
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That is not how you create a consensus for a genome. You would either need to align to a reference and/or assemble the data.
but is there is a way to make alignment on these files without using ref genome by using python?
Aligning millions of fastq reads to each other makes no logical sense.
pythonis a programming language not a tool for analysis.