Alignment of Ion torrent generated data
i have ion-torrent generated data of human genome (single end 15 fastq file ) . i want to align these using bowtie2 tool. so is there any specific parameter for alignment of ion-torrent data ?
bowtie2
ion-torrent-data
alignment
• 561 views
•
link
updated
by
Arup Ghosh
•
written
by
snehagoel3142 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Adapting nf-core/sarek for Ion Torrent Single-End Data Analysis
written by Nour-eddine •Hello ! I'm attempting to utilize the Sarek pipeline for analyzing Ion Torrent data, but I'm facing challenges with configuring single-end files. Unlike Illumina, the …
-
Mapping Human Genome
written by adarsh •Hi, I have a fastq file of human ampliseq genome from Ion Torrent sequencing. I need to align this to hg19 reference, Which tool will …
-
Package for transcript assembly of reference-aligned ion torrent reads
written by cjwwfd •I am trying to align and perform reference-guided transcript assembly for all publically available EST and RNA sequencing reads based on a new reference genome …
-
Raw reads from Ion Torrent. Is it single-end reads or paired-end reads.
written by eudaims •Hi guys, I got a raw data generated from Ion Torrent (Ion PGM) for sequencing virus species. The raw data in FastaQ format . Format …
-
How to determine the total average insert size from differently divided from one fastq data pool to…
written by bioinfo •Hi, I have difficulty in calculation for average insert size and standard deviation of RNA-seq NGS data to submit GEO database. I generated two fastq …
-
Aligning Ion torrent sequenced genome with a reference sequence
written by PaulI am trying to align a bacterial genome with a reference genome using bowtie2 in ubuntu OS. The bacterial genome is sequenced using Ion torrent. …
-
genomic analysis workflow for plants
written by StudentBio •please can someone share with us ta link where can i find the workflow för genomic analysis..... for assembly fastq file, single end, ion torrent, …
-
Genome assembly contig ordering
written by mittu1602Hello, I am working with single-end genome assembly of a fungal species generated by ion-torrent PGM, I have assembled draft stage by de-novo technique using …
-
Quality control for Ion Torrent
written by erwan.scaonIs there a tool to check the quality of ion torrent fastq files ? Something like FastQC, but designed for ion torrent and not for …
-
Bowtie2: missing forward reads after alignment
written by nikkihathi •Hello! I have paired end exome sequence data for 50 human genes only. I have mapped the exome data to hg19 assembly using bowtie2 with …