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How to model a short miRNA Sequence

Hello Everyone,

Please let me know how can I model a short miRNA motif residues into a pdb format.

Waiting for your quick response.

Regards,
Garima Verma.

mirna pdb
• 2,153 views • link
updated by Ram Ram • written by verma • verma

Where would you get the 3D coordinates of the atoms from?

Guess this question fell under the carpet because it was very unclear what OP wanted to achieve.

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written by Michael Dondrup Michael Dondrup

Thanks for your answer. I have already did the modeling and extract the results for my short miRNA motifs through other computational software's. Thanks again.

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written by verma • verma

Please use ADD REPLY/ADD COMMENT when responding to existing posts to keep threads logically organized.

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written by GenoMax GenoMax

1 answer

You can get 3D structures of complexes of miRNA with e.g. the RISC complex from PDB. Search for "miRNA" there.

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written by Michael Dondrup Michael Dondrup

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