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cuffdiff was killed without any information?

I have 29 samples to run cuffdiff, before cuffdiff it runs smoothly. But I run cuffdiff several hours it shows that:

[17:23:59] Loading reference annotation and sequence.
Warning: No conditions are replicated, switching to 'blind' dispersion method
[17:24:41] Inspecting maps and determining fragment length distributions.
Killed

How can fix it?

rna-seq
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updated by Ram Ram • written by i19870503 • i19870503

1 answer

Either the system, or an administrator of the system has killed the job. You probably ran out of memory.

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written by User 59 User 59

You are right, it runs without any error when I try to use less samples run the command.

So do you have any idea to limit the memory usage of cuffdiff?

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updated by Ram Ram • written by i19870503 • i19870503

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