integrate of microarray
eset1 = getDataset("GSE19804", "GPL570", norm="FRMA", features = "gene", curation = 17470)
I dont know what means ""curation = 17470"" in this R script?
software error
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Shamim Sarhadi
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It means that the value
17470is being assigned to the variablecuration. For a more relevant answer, please add some context to your question.