When I write this command in R
eset1 = getDataset("GSE3188", "GPL570", norm="FRMA", features = "gene", curation = 9272)
after loading library(insilicobd)
R says:
INSILICODB: You are not allowed to access this dataset.
I don't know what is problem and how can I solve it?
•
written
by
Shamim Sarhadi
From the documentation: 1.2 Check the accessibility of data
You need to login to access datasets and datasetinfo
Thank you Pgibas
•
written
by
Shamim Sarhadi
I have the same problem. and I have logged in using username and md5 hash password.
Commands used:-
biocLite("inSilicoDb")
library(inSilicoDb)
install.packages('digest', repos='http://cran.us.r-project.org')
library(digest)
InSilicoLogin("************@gmail.com", digest::digest('PASSWORD', algo='md5', serialize=FALSE));
eset42743 = getDataset("GSE42743", "GPL570", "FRMA", genes=TRUE);
It shows warning:
INSILICODB: The bioinformatics pipeline is now running. An email will be sent when computation is finished.
INSILICODB: Dataset GSE42743, GPL570, CURESET, PROBE, ORIGINAL, 20339, RNA, Oral Cavity Cancer Compared to Adjacent "Normal" Tissue [Validation Set], queued, 110, GSE42743GPL570_RNA_ORIGINALPROBE_20339.RData
Log in to answer this question.
