What would be a good quality indicator for samples after sequencing?
I have some gene panel sequencing samples with varying median read counts - is this a sufficient measure for quality? Are there other possibilities to measure quality?
I only want to use high quality samples as controls in my pipeline.
• 1,477 views
•
link
updated
by
Antonio R. Franco
•
written
by
veroamilbe •
•
written
by
veroamilbe •
1 answer
If you are dealing with high-thorughput sequences, I think one of the best way to get a quality indication is using FastQC
• 0 views
•
link
written
by
Antonio R. Franco
Log in to answer this question.
More posts like this
-
Should QC cutoffs be done per-sample or one global cutoff for snRNA-seq with very different samples?
written by dxj294 •
-
WGCNA Workflow from GEO FASTQ Files – Expression Type, Sample Inclusion, and Preprocessing
written by tutorwhizzz •
-
FASTQ quality check
written by Roy •
-
Question about implementing quality control of TCGA data for survival analysis
written by curious
-
Filtering and Trimming Metagenomic Data
written by MK2000 •
-
ConsensusPathDB enrichment analysis: input data normalization?
written by abe •
-
RNASeq differential expression: How to deal with few genes with extremely high expression levels
written by komal.rathi
-
Duplicate reads in RNA-seq
written by mmrcksn
-
How to detect CNV with panel sequencing?
written by chen
-
How to compare the correlation between the RNAseq data from human and mouse tumor?
written by ifudontmind_plzz
