Mantel Test of genome size difference and genetic distance in R
I am trying to conduct a Mantel test in R for 32 species on differences in genome size between each species and the genetic distances for 28S gene between all species. I calculated genetic distance in MEGA6. What is the best way to get this data into R? The MEGA genetic distances are output matrix-style in a CSV file but I don't know how to transform this data into an R-appropriate matrix for the test. Thanks in advance.
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Biostar
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nick.w.jeffery3 •
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nick.w.jeffery3 •
1 answer
read.csv if your data is a true CSV, read.table if tab (or other) delimited.
Afterwards, it's simple to coerce to a matrix or data frame: ?matrix ?data.frame
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