Thanks for the reply. I am actually looking for a tool which is in between a graphic program and a genome browser. Basically I would simply like to to add arrows as genes and select the respective length in accordance with teh dimension of the gene. I do not have a GFF file for the region I am interested in.
Is there any program to manually draw gene clusters?
I am aware of the multiple post on how make figure containing gene cluster and genomic regions.
I have a slightly different question, is there any program that allows me to draw manually small gene clusters, keeping the dimension of genes and distance consistent?
I was thinking to a program that allows me to draw genes, and allows me to consistently choose their length and the distance among them.
Is there anything like that?
2 answers
If you can represent those genes in GFF format, then you can try GenomeTools for graphing them. I think you can use almost any genome browser once you have the custom GFF file (for your gene cluster).
Have a look: http://easyfig.sourceforge.net/
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Do you have coding knowledge? If so, which languages? I know some libraries which could be really useful.
Linux, some basic R and Python