Hi all,
List some tools to find the position of exons in the cDNA sequence.
Also help me if any package available in R.
•
written
by
muvinika •
In human, if you have cDNA sequence in FASTA format, you can use BLAT available from UCSC to map your cDNAs against the genome. The exons will then be the various blocks of the alignments.
•
written
by
Sean Davis
Thank you
•
written
by
muvinika •
While mapping chromosome to cDNA sequence in BLAT the results are aligned in reverse strand . How do i convert it into forward strand.
Log in to answer this question.
what's your input ?
cDNA sequence
I think I'm going to leave biostars.org
It is not possible to find the exons in cDNA sequence without other information. What other information do you have or propose to use to get your answer?
You don't have, just by chance, the genome sequence,too? Just asking.
Yes from genome sequence. Sorry I am from computer science so only I could not able to answer clearly.
So, you have cDNA sequence AND the sequence for the chromosomes? What species are you working with?
Homo sapiens
Rather than creating separate answers, please respond with comments.