[solved] PHANTOM enhancers download

Hello,

Could you please advise where to find the FANTOM's list of cell-type specific enhancers?

At this site there is only one file for human, which means these are non cell-specific: http://fantom.gsc.riken.jp/5/datafiles/latest/extra/Enhancers/

I want to get a similar list as in the link above, but for a specific cell line profiled by PHANTOM.

How to do this?

Thanks

PS. Solved.

chip-seq rna-seq annotation

• 2,452 views • link

written 11.3 years ago by chemcehn

Could you please share your solution?

• 0 views • link

written 11.3 years ago by someone135 •

0 answers

No answers yet.

More posts like this

News: Cellosaurus release 50 is available
written 1.9 years ago by Amos Bairoch •

Cellosaurus release 50 is available on https://www.cellosaurus.org/ **1) Statistics** - 159461 cell lines (118612 human, 28415 mouse, 2949 rat) - 878 species represented - 119844 …
How to get list of blood-expressed Fantom 5 enhancers?
written 4.2 years ago by samuelandjw •

[Andersson et al. 2014][1] described a set of 43,011 permissive enhancers using the FANTOM5 panel of samples. The list of the set of enhancers can …
News: Cellosaurus release 40 is available
written 4.6 years ago by Amos Bairoch •

Cellosaurus release 40 is available on the ExPASy server: https://web.expasy.org/cellosaurus/ **1) Statistics** - 134839 cell lines (101276 human, 22999 mouse, 2498 rat) - 747 species …
Understanding Gene Set Enrichment Analysis (GSEA) Tools in RNA-Seq
written 5.0 years ago by Noah E. •

Hello all, I am very new to the bioinformatics space and am still trying to figure out how to make sense of my data. Thus …
MAESTRO returns an error
written 5.1 years ago by Luna_P •

Hello, I came across MAESTRO(Model-based AnalysEs of Single-cell Transcriptome and RegulOme) and wanted to use it on my data. I have used the instructions on …
Sorting and Counting Deep-Seq reads
written 7.1 years ago by Allie J •

Disclaimer: I have approximately 5 weeks of python experience. **I want to pair my sequencing reads based on flow cell location, sort the sequencing reads …
[Excel] Generate a similarity matrix on non-continuous values, ignoring empty cells
written 11.1 years ago by Kame •

Dear all, I have this matrix of non-continuous, independent data (let's call them "a", "b", "c"). <pre> <code>Variable 1 Variable 2 Variable 3 Sample 1 …
Recommended tools for positional gene enrichment (PGE) analysis?
written 11.3 years ago by Christian

I am looking for recommended methods that perform positional gene enrichment (PGE) analysis in human genomes. What I mean by PGE is to find out, …
Bioperl Get Gene Id From Protein Accession Using Eutilities
written 13.4 years ago by rwn

Hello, I would like to get a list of NCBI-type gene IDs from a list of protein accession numbers. I am attempting to use the …
How Do You Deal With Biological Context During Pathway Analysis?
written 14.6 years ago by Alex Paciorkowski

An alternative way to phrase this question: How do you increase the quality (specificity & sensitivity) of pathway analysis results? Our group often uses a …