consensus sequence of complex estructural variants

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9.2 years ago

user230613 ▴ 360

Hi all , I would like to know if there is any tool to create a consensus FASTA sequence having a vcf file with complex SV's such as inversiones, duplications, translocations... I am looking for something like bcftools consensus but for SV's.

Thank you.

consensus estructural variant • 2.2k views

ADD COMMENT • link updated 24 months ago by Ram 43k • written 9.2 years ago by user230613 ▴ 360

1

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If the SV is short Wham can provide the consensus. Delly also provides a consensus sequence.

ADD REPLY • link updated 24 months ago by Ram 43k • written 9.2 years ago by Zev.Kronenberg 12k

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