Calling structural variants from RNA-Seq data
Hi,
I know that it is possible to call SNPs, indels using the GATK pipeline. However, I wonder whether it is possible to call large scale variants such as copy number variants (CNVs): deletions, duplications, translocations, etc. from RNA-Seq data and whether there is any pipeline or tool doing this. I will appreciate any comment about this issue.
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barslmn •
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Yasin Uzun •
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Yasin Uzun •
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There are new studies about detecting structural variants from RNA-Seq. This blog about RNA-seq is a great resource: https://www.rna-seqblog.com/?s=CNV