Whole genome comparison

During comparative genome analysis, how will it be possible to extract similar genes and their sequences from two whole genomes? Suppose, when working with two bacteria genomes we found they have 3500 genes in common. Now I want to take the sequences of those 3500 genes from both the genomes.

next-gen-sequencing assembly genome

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updated 4.3 years ago by Ram

• written 11.5 years ago by nepgorkhey

2 answers

I think that orthoOMLC and get_homologoues can help you with that. at hte end you should have sorted out the common genes are unique files.

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written 11.5 years ago by dago

Seems like get_homologues is going to help me...Thanks a lot :)

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written 11.5 years ago by nepgorkhey

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