I'm trying to find Transcription factor binding sites using JASPAR on UCSC. The area of thee genome I am interested in ends up having a …

I wish to find out if HOMER tool can be used to predict the binding site of a transcription factor on a list of DNA …

how can I find the most frequent isoform in each cell line. for example I have RNA-seq data of HeLa cells and want to get …

I used Transcription factor binding site in Annovar to analyze my exome sequencing data. I am surprised to see that my synonymous and nonsynonymous mutations …

Hi, I was wondering what is the best tool for finding transcription factor binding sites in a long genomic DNA sequence? I understand that online …

What is the most abundant sequence specific transcription factor in hela cells?

First, I have contacted Biobase about this but wanted an independent opinion. At [this URL][1], Biobase describes a service called TRANSFAC TFBS. I am trying …

<p>What is the explanation for transcription factors to bind to intronic regions downstream of the transcription start site?</p> <p>Given that the most common model for …

<p>(a) Which is the best database for transcription factor binding site, TRANSFAC or JASPAR? Why?</p> <p>(b) Is it still valid to assume, "transcription factor binding …

<p>I'm taking an introductory bioinformatics course and the notes are rather sparse, so I've been left mostly to my own devices to figure things out... …