Convert BlastX -m 6 output to -m 7 output for MEGAN
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Entering edit mode
9.4 years ago
niu2rseq ▴ 90

Hi All,

I have some blastx -m 6 output files from my transcriptomics data:

c83_g1_i1    gi|643021888|gb|AIA87534.1|    45.31    64    35    0    1    192    44    107    3e-05    47.4
c91_g1_i1    gi|499489364|ref|WP_011176004.1|    39.60    101    59    1    306    4    1676    1774    7e-11    68.2
c146_g1_i1    gi|655447616|ref|WP_028831292.1|    36.05    86    51    1    246    1    53    138    2e-10    64.7
c202_g1_i1    gi|611546002|gb|EZL24471.1|    74.36    39    10    0    107    223    1    39    3e-09    57.4

I now want to use MEGAN for the analysis of these blastx files. However MEGAN only takes BlastX -m0 or -m7 format. It may take a while for me to rerun these jobs with a new output -m7 format, so I am thinking to convert my files to other format. Anybody has some suggestions how to do that? Thank you very much!

MEGAN BLASTX • 2.4k views
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Entering edit mode

I haven't heard of any...and I think it is simpler to rerun the job...

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