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Command Line Tool To Convert An Msa From .Hssp To .Aln

Hello, I am interested in converting .hssp file formatted MSAs to .aln (clustal format). I have searched online and have not been able to find a command line tool for the task. Are you aware of any tools that can convert .hssp to .aln? One requirement is that the conversion must be automated for hundreds of .hssp files. Thank you, Adam

multiple command-line format
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updated by Hamish Hamish • written by Burlappsack • Burlappsack

I had the same problem before and what I did at last was to write a script to the job for me.

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written by Reyhaneh Reyhaneh

Unfortunately, that looks like the approach I am going to have to take.

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written by Burlappsack • Burlappsack

1 answer

I would have a look at MView to do this. You can experiment using the service provided by EBI: http://www.ebi.ac.uk/Tools/msa/mview/

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written by Hamish Hamish

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