genes count in sam file using htseq-count
I run the htseq-count
htseq-count -s no <fileName>.sam genes.gtf > counts.txt
And I got the following error
[Malformed SAM line: MRNM == '*' although flag bit &0x0008 cleared", 'line 68 of file sorted_genome_alignments.sam')
[Exception type: ValueError, raised in _HTSeq.pyx:1323]
Please any idea?
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bolbolman2000 •
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