Best Way To Get All Genes/Proteins Related To A Taxon Id From Metahit And Hmp · Biostar

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Best Way To Get All Genes/Proteins Related To A Taxon Id From Metahit And Hmp

Hi, I have a list of taxid from species that are a part of MetaHIT and taxid from species that are a part of HMP database. But I am looking far a programmable way for obtaining all the gene ids, genes, gene symbols, gene description under these taxids. Some sample taxid's are : MetaHIT: 657324 717962 751585. HMP: 563193 411465 563194. If there is one dump file containing all this information that would be awesome.

Regards, Dhruv

mapping gene taxonomy

• 3,195 views • link

updated 14.9 years ago by Pierre Lindenbaum

• written 14.9 years ago by Dhruv Sakalley •

1 answer

You can find some genes for the human genome (see the table on the right):

http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606

but it seems that there is no sequences annotated as "Gene" in:

If you want to find the sequences (!= gene) in those organisms, see this related question.

• 2 views • link

updated 6.9 years ago by Ram

• written 14.9 years ago by Pierre Lindenbaum

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