Hi all, I have been trying to convert my bam file to vcf file by using freebayes This is the command I am using freebayes …

I am trying to download human `rRNA.fasta` file. do you know where I can find this file? in one of the older post in this …

Dear Community, I am trying to construct an individual genome from reference genome in fasta format and his/her structure variation file in VCF format. I …

Hi, I've been struggling with finding a full, unfiltered GO annotation file (GAF). A number of different GO enrichment sites point to here to download …

Hi there, Can someone please point the URL from where processed long range interacting pairs, 4C/5C data from NIH roadmap epigenome data can be downloaded. …

I am running muTect with the following parameter, and I have the following errors ``` java -Xmx8g \ -jar ~/unixTools/muTect-1.1.4-bin/muTect-1.1.4.jar \ --analysis_type MuTect \ --reference_sequence …

Hi all, I have been trying to use Mutect to compare results from Varscan and other tools. To run MuTect, pre-processing from GATK and Picard …

Dear All, I have been using VarScan , GATK and Mutect now for calling my somatic variations. I have used the VarScan, GATK and Mutect …

Hi everybody, A bam file has been aligned using hg19 reference genome. Thus, the chromosome notation is [chrM, chr1, chr2, chr3, chr4, ..., chrX,chrY]. I …

<p>hi all, i was wondering if someone could point me to where i can download the latest dbSNP in VCF format? thanks in advance.</p>