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Where all can I find Histone Modification data for certain Human and Mouse cells

Hi,

I am trying to look for Histone modification data for Human/Mouse. I was looking at following tissues and was wondering if this data might be available.Can anybody kindly point me to data for following tissues.

  1. Cerebellum
  2. Colon
  3. Cortex
  4. Heart
  5. Intestine
  6. Kidney
  7. Liver
  8. Lung
  9. Olfactory bulb
  10. Pancreas
  11. Placenta
  12. Skin
  13. Spleen
  14. Stomach
  15. Thymus
  16. Uterus

Regards

histone-modification human mouse
• 5,203 views • link
updated by Ram Ram • written by Saad Khan Saad Khan

2 answers

you can look into NIH road epigenomic datasets, they have data in many formats whichever you like

http://www.roadmapepigenomics.org/data

http://www.ncbi.nlm.nih.gov/geo/roadmap/epigenomics/

even at NCBI

http://www.ncbi.nlm.nih.gov/epigenomics/

just give key words as Human or mouse + Histone + tissue

you would see their all deposited data

• 0 views • link
updated by Ram Ram • written by Manvendra Singh Manvendra Singh

But that data is not publicly available I believe.

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updated by Ram Ram • written by Saad Khan Saad Khan

I tried the way you suggested.For most of these tissues in Mouse I could not find histone data.

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updated by Ram Ram • written by Saad Khan Saad Khan

You can search on NCBI Geo to see what are histone data available

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updated by Ram Ram • written by Manvendra Singh Manvendra Singh

Histones and their modification in humans (mammals) can be found in several databases (in addition to ROADMAP) such as HIstome, Human Histone Modification Database, iHMS, HistoneDB, Histone Systematic Mutation Database, and WERAM

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written by moldach moldach

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