How to Visualize Hydrogen Bondings in a protein using molviewer of MATLAB?
I would like to visualize the hydrogen bonds in a protein. How to achieve this using molviewer of MATLAB?
matlab
hydrogen bonding
protein
• 2,454 views
•
link
updated
by
Biostar
380
• |
written
by
devanand.t.1986
0
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How can I calculate the distance between a C-alpha atom and its hydrogen bond in a protein?
written by user366312 2I need to calculate the distance between a given C-alpha atom and the Hydrogen bonds in a protein in `BioPython`. And, I need to calculate …
-
How to show intermolecular forces between two chains within the same protein in Pymol
written by Lucy 0Hello! Would anyone know how to show intermolecular forces such as Vanderwaal forces, hydrogen bonds etc in Pymol using a python script? I would like …
-
Issues generating hbmap.xpm file from gromacs hbond module, using -xpm flag?
written by oliver.cottrell 0I am currently trying to monitor the changes that a ligand elicits in the hydrogen bonding pattern of a protein during binding. I can easily …
-
How to detect entire beta sheet (multiple strands) using STRIDE on a pdb file?
written by jl_heights 1In PDB files, the header lists the beta **sheets** and then the **strands** in those sheets. I prefer to detect beta strands with the STRIDE …
-
How to calculate hydrogen bonds of a protein structure from its pdb file?
written by m.taheri 5Hello every body. My question might seem very basic so excuse me about that. I need to calculate hydrogen bonds of any protein structure from …
-
Java api or library to calculate hydrogen bonds of a protein
written by m.taheri 5<p>Hello every body.</p> <p>I need a Java api or library for calculating hydrogen bonds of a given pdb file. Even a Web Service that calculates …
-
How to use biopython for finding distance between N - CA (nitrogen - C alpha) bonds in proteins fro…
written by devanand.t.1986 0Hi all, I would like to plot a histogram of alpha-cabon to nitrogen bond distances of ubiquitin protein. So I downloaded the 1UBQ.pdb from RCSB …
-
Could It Be Possible To Define Hydrogen Bond With A Particular Residue In Docking??
written by Spandankeshav 16<p>Hello,</p> <p>I was wondering that is it possible to defined hydrogen bonding of ligands with a particular residue before submitting a job in gold (in …
-
Dssp And 6 Different Hydrogen Bonds - What Are They Exactly
written by User 1933 36<p>DSSP returns 6 different hydrogen bonds.</p> <pre><code>HYDROGEN BONDS OF TYPE O(I)-->H-N(J) ; PER 100 RESIDUES HYDROGEN BONDS IN PARALLEL BRIDGES; PER 100 RESIDUES HYDROGEN BONDS …
-
Software For Hydrogen Bond Detection In Pdb Data?
written by Douglas S. Stones 28<p>In order to study the network structure of proteins, I'm looking for software that can predict the existence of hydrogen bonds in proteins from PDB …