I need to calculate the distance between a given C-alpha atom and the Hydrogen bonds in a protein in `BioPython`. And, I need to calculate …

Hello! Would anyone know how to show intermolecular forces such as Vanderwaal forces, hydrogen bonds etc in Pymol using a python script? I would like …

In PDB files, the header lists the beta **sheets** and then the **strands** in those sheets. I prefer to detect beta strands with the STRIDE …

Hello every body. My question might seem very basic so excuse me about that. I need to calculate hydrogen bonds of any protein structure from …

<p>Hello every body.</p> <p>I need a Java api or library for calculating hydrogen bonds of a given pdb file. Even a Web Service that calculates …

Hi all, I would like to plot a histogram of alpha-cabon to nitrogen bond distances of ubiquitin protein. So I downloaded the 1UBQ.pdb from RCSB …

<p>Hello,</p> <p>I was wondering that is it possible to defined hydrogen bonding of ligands with a particular residue before submitting a job in gold (in …

<p>DSSP returns 6 different hydrogen bonds.</p> <pre><code>HYDROGEN BONDS OF TYPE O(I)--&gt;H-N(J) ; PER 100 RESIDUES HYDROGEN BONDS IN PARALLEL BRIDGES; PER 100 RESIDUES HYDROGEN BONDS …

<p>In order to study the network structure of proteins, I'm looking for software that can predict the existence of hydrogen bonds in proteins from PDB …

<p>I'm studying the interaction between two binding proteins (two chains) using Rasmol but it only shows the hydrogen bonds within the chain itself. </p> <p>Is …