Where can I download chromatin state genomic co-ordinates of C.elegans ?
I tried http://intermine.modencode.org to download chromatin state genomic co-ordinates of C.elegans reported in the paper http://www.ncbi.nlm.nih.gov/pubmed/21177976. All I found was Chip-Seq data but not chromatin states. Any suggestions? Thanx in advance
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What sort of data are you looking for if not ChIPseq? Have you tried searching SRA?
Chromatin states are the regions *( in BED format) enriched with combinatorial histone ChIP-Seq marks. These sets were available for drosophila at modENCODE but not for C.elegans.
Right, so you want to call peaks and intersect/overlap them then.
They are feasible but I am just looking for the data that they already published. :)
You'll likely have to ask them to upload the peak calls then.