2 answers
You might check OMIM for human.
As suggested by Sean Davis, I think OMIM is the source for such loci, for other animals it is OMIA.
For automating it In UCSC there is a track of OMIM loci, so you could be able to get BED genomic coordinates using table browser
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&c=chr21&g=omimGene2
I am unaware of any available OMIA track.
oops.....Sorry .....OMIA does not collate mouse loci
For Mouse I think Jacksons Mouse genome informatics tracks on mm9
http://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=317470363&g=jaxPhenotype
http://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=317470363&g=jaxQtl
It is quite possible that no single database contains all the information you need. Note that the loci in OMIM are phenotypic, by-and-large. You mention INK4a/INK4b as an example--these are genomic loci and can be located using "normal" genomic tools like Entrez Gene.
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