Hi everyone,

I want to use rnammer with my favorite annotation pipeline prokka (as a supposedly more sensitive option than the default-tool barnap). The prokka documentation states that rnammer needs hmmer version 2 (NOT the current version 3), so I want to install it on my system.

The Installation-instructions seem pretty straightforward (unpack--> "make check"-->"./configure"-->"make install").

However when I run "make check", I get the message :

make: *** No rule to make target 'check';. Stop.

when I run "./configure --prefix=/home/me/test" the script seems to run without error, but when i follow up with "make install" I get the message:

mkdir -p /home/me/test/bin
mkdir -p /home/me/test/man/man1
for file in hmmalign hmmbuild hmmcalibrate hmmconvert hmmemit hmmfetch hmmindex hmmpfam hmmsearch
  do
  cp src/$file /home/me/test/bin/
  done



cp: cannot stat 'src/hmmalign': No such file or directory
cp: cannot stat 'src/hmmbuild': No such file or directory
cp: cannot stat 'src/hmmcalibrate': No such file or directory
cp: cannot stat 'src/hmmconvert': No such file or directory
cp: cannot stat 'src/hmmemit': No such file or directory
cp: cannot stat 'src/hmmfetch': No such file or directory
cp: cannot stat 'src/hmmindex': No such file or directory
cp: cannot stat 'src/hmmpfam': No such file or directory
cp: cannot stat 'src/hmmsearch': No such file or directory
make: *** [install] Error 1

This happens with or without the configure-option '--prefix' and with or without admin rights.

Any hints on what to do?