Hello biostars I am trying to get some information from paper its genecount with genename. according to my research of interest I need chromosome information …

I have a huge vcf file that I needed to update the SNP names from position (chr1-22:xxxxxx) to rs name in VCF file. I used …

I need to store locally a table that contains 3 columns - gene symbol, refseq id, ensembl id. (mouse) I have been able to retrieve …

Hi all, As per PANTHER manual, statistical enrichment test uses Mann-Whitney U Test (Wilcoxon Rank-Sum Test) to find enriched pathways. It requires a input file …

Hi! I am trying to obtain a data frame from a vcf read with VariantAnnotation package. This vcf is the output of VEP (variant effect …

I'm a novice and have a copy of my own Exome VCF file but it only contains the "Chrom" "Pos" fields but not the "ID" …

<p>How can I convert a multisample vcf file to a format that can be loaded in Haploview?</p> <p>I have WGS SNP calls for a set …

<p>Hi! </p> <p>I am having a spot of trouble with file conversion. I am trying to test for multiple correction using SNPSpD (<a href='http://gump.qimr.edu.au/general/daleN/SNPSpD/'>http://gump.qimr.edu.au/general/daleN/SNPSpD/</a>). I …

<p>Hi folks: I am trying to get SNPs displayed in IGV track by loading them from GFF file, when I use 'Name=...' for naming of …

<p>I have been trying to use the Haploview software. The input files need to be in two formats- ped and info. Could you please let …