Filter field are all ".", no "PASS" in vcf file ?

I have used HaplotypeCaller to call variants in a whole exome sequencing data.When I scan the file, i found in the Filter field all are ".",even no "PASS",but most of the sites have high QUAL. Why?

thx in advance

software error next-gen sequencing genome

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updated 5.4 years ago by prashantwaiker •

• written 11.9 years ago by 897598644

Just double checking, are you sure it's the FILTER field and not the ID field you're looking at?

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written 11.9 years ago by Ram

I know it's a pretty old post but I am seeing the same thing in my VCF file (btw data is also pretty old like 6-7 years)

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written 5.4 years ago by prashantwaiker •

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