Short Read Aligner For A Particular Input Format
Hi colleges,
I have a csv-file which contains "reads \t readcount" lines. Is there a way to use Bowtie or BWA to map this sequences to my reference data, or is it necessary to reformat in some kind of fasta, for instance?
Thank for any advice.
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Jeremy Leipzig
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Nøke •
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Nøke •
1 answer
yes use a script to put this tsv into a fasta formatted file. you should store the counts in the deflines, since you might want to use that data to weight some quantitative analyses
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