Hi all, I am not sure if this question still belongs to the scope of BioStars. It is my first time submitting mRNA-Seq data to …

<p>Hello,</p> <p>Did you ever have experience working with very large files with HOMER? I am using a 400 Gb file as Input to create a …

<p>Dear all,</p> <p>I have downloaded all GO terms of UniProt genes (<a href="ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gp_association.goa_uniprot.gz">file</a>). I would like to calculate the Information Content (IC). According to my …

<p>I would like to use the Gviz package but my I have a reference genome in FASTA format, not as a valid UCSC genome (it …

<p>I&#39;m trying to figure out how to create a local BLAST database from a fasta file with 2000+ sequences. I thought I had it all …

<p>I&#39;m an intern in a bioinformatic lab for the summer and I just got permission to use a super-computer to do protein disorder jobs. I …

<p>Hey all :]</p> <p>I use samtools&#39;s depth, and occasionally samtool&#39;s pileup commands to calculate coverage of my reads to the genome before binning for coverage. …

<p>I would like to calculate the mappability of 50 kb windows of Mus musculus assembly 9 (mm9). I downloaded the mappability with 100 bp reads<a …

<p>Hi all</p> <p>I need some help with sequence alignment using BWA as I&#39;m at my wits end.</p> <p>Background: I&#39;ve sequenced wheat DNA (note, highly repetitive) …

<p>Hy Hello all, I have an idea to implement but I hate to copy if it is been used by any other website(s). My idea …