Hi, I plan to use some functions from [**metaboAnalyst**][1], such as, pathway enrichment, but I want to check if their internal KEGG pathways database is …

Hello all, I was wondering if www.pantherdb.org is still up and running? It seems I can not access the site and can't find any information …

Hello All, Can anyone point to some good tutorial , review , software etc. for a beginner to understand how to identify Causal gene networks …

The http://www.geneontology.org/ site is down, Any idea when it'll come back? I've to download some human specific ontology and association files. Is there any alternative …

<p>Can anybody recommend a GO term redundancy removing stand alone software like the REVIGO Web server? Is there any R, Perl or Python package available …

<p>Is there any comprehensive review available for the methods available for weighting edges in protein-protein interaction networks?</p> <p>I know a few based on GO-similarity or …

<p>I've encountered a few supressed RefSeq entries like <a href="http://www.ncbi.nlm.nih.gov/protein/NP_033730">this</a> </p> <p>which tells that : "This RefSeq was temporarily suppressed because currently there is insufficient …

<p>I'm trying to access the String DB through <a href="http://www.ebi.ac.uk/Tools/webservices/psicquic/view/main.xhtml">PSICQUIC</a> for fetching protein-protein interaction data of a particular model organism.</p> <p>The typical output from PSICQUIC …

<p>I've two sets of protein sequences for a particular organism for which the genome sequence is available to us.</p> <p>One of the protein sets is …

<p>I've a long list of RefSeq mRNA Ids for a particular organism. I wish to download all the corresponding coding sequences(CDS) in fasta format, where …