Removing Cage effect

Hello Biostar,

I am doing metagenome analysis on 16srRNA data. During my analysis I am seeing huge cage effect.

Can anyone suggest how to overcome this effect.

Best,
ARich

genome

• 1,423 views • link

updated 3.4 years ago by Ram

• written 12.0 years ago by ARich

0 answers

No answers yet.

More posts like this

AWS for Bioinformatics
written 4.0 years ago by lippithakkar •

Hello, I am looking forward to learn AWS with respect to Bioinformatics or AWS in general for personal and professional benefits. I am looking for …
Operon Prediction for prokaryotes
written 6.4 years ago by ARich

Dear Biostarizens, I am currently working on operon prediction project. In this work i would like to find of similar cooperonic organization in prokaryotic genomes. …
Metagenomics Analysis Pipeline
written 6.5 years ago by vishalchanda364 •

Hi there, I am new to metagenomics analysis and I am doing a virome analysis from the sample, can anyone help me suggesting the best …
Diamond blastp output
written 7.1 years ago by ARich

Dear Biostar user, I have a question regarding diamond output. I ran diamond blastp on my contigs against NR database. After this i used diamond …
FANTOM5 CAGE data to get promoter region
written 7.7 years ago by bharata1803

Hello, I am really new to CAGE-seq and data published in FANTOM5. http://fantom.gsc.riken.jp/5/data/ Basically, my main goal is to find promoter region of a transcript …
Metagenome Analysis of mycobacterium tuberculosis
written 8.3 years ago by sushma9devi •

Hello everyone we are doing project on tuberculosis for my academics in college, we are about find the interaction between TB and human inorder to …
enrichment term from clusterprofiler
written 9.3 years ago by ARich

Dear Biostar users, I am using clusterprofiler tool for enrichment analysis but its not working with Staphylococcus_aureus (Newman strain) kegg and GO annotation is available …
How to estimate the metagenome size
written 12.0 years ago by ARich

Hello Biostar, I am doing denovo metagenomic assembly with one of the test data from literature to have hands on training. I want to know …
How To To Relate The Otu Abundance Table With Bacterial Composition Data In Mothur (Rda Analysis)
written 13.2 years ago by ARich

Hello Biostar I have few queries regarding the RDA analysis to discuss. Although I see clear difference in the bacterial community between the samples, I …
Datasets Downloads From Eqtl.Uchicago.Edu
written 14.9 years ago by J.F.Jiang

hello, everyone: I am doing a job of eqtl gene collection. From biostar, one good website name eqtl.uchicago.edu was fit to my work, which combined …