Hello all,

I am using cBio to gather mutation statistics of more than 1000 genes.

I am hitting a small problem when I look for all CNVs reported in each study using cBIO portal.

For example: I am interested in looking for all CNVs ever reported for five different ovarian cancer studies. I have tried to explore it using HGNC gene list and noted that only 100 genes are allowed to search using the web interface.

I can't see a method / function / URL encoding to parse CNV data using your R package or the Web-service. May be this is doable using something very simple or may be am missing something.

Any help to extract genome-wide CNV data is really appreciated!

Thanks in advance !