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Do You Know Any People Doing Bioinformatics For Microbial Ecology Studies?

Jonathan Eisen wants to compile a list of people doing bioinformatics for microbial ecology studies. Do you know any?

This was the original tweet.

If we get an interesting list of names here I will send the link to Jonathan.

Thanks for your help.

next-gen sequencing phylogenetics

4 answers

Dr Chris Quince from the University of Glasgow does bioinformatics on NGS data to determine microbial communities link text

Dr David Bass from the Natural History Museum London works on the biodiversity, phylogeny, and ecology of protists using NGS and bioinformatics link text. (The question didn't specify whether it was only bacteria).

EDIT 1:

(Warning: mild self-promotion)

  • [?]Curtis Huttenhower[?], [?]HUMAnN[?] and [?]LEfSe[?].
  • [?]Daniel Segre[?], metabolic interactions.
  • [?]Claus Wilke[?], adaptation and evolution.
  • [?]Chris Marx[?], systems biology.
  • [?]Dan Huson[?], [?]MEGAN[?] and [?]Metasim[?].
  • [?]Jeroen Raes[?], metabolic networks.
  • [?]Elhanan Borenstein[?], also metabolic networks (different flavor).

I attended a conference with Philippe VANDENKOORNHUYSE.

Scientific responsibilities

Environmental genomics facilities at University of Rennes I • Genomics platforms & facilities in Western France

Teaching responsibilities

Diploma in the field of Ecology and environmental sciences at OSU de Rennes (University of Rennes I)

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