mirdeep2 pdf file data overlap

As you can see for the pdfs generated by mirdeep2, the secondary structure and the reads seem to overlap over each other. Why is this happening?? Please help
mirdeep2
• 2,045 views
•
link
updated
by
Ram
4.5K
• |
written
by
The Last Word
23
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Really Basic Statistics: Expected frequency?
written by jth 19Hi everyone, I have a question on basic statistics. I feel really bad about asking this but I'm having a brain freeze now. So, I'm …
-
News: MinION Community Meeting: Thursday Dec 3rd (now live)
written by Istvan Albert 10KThe **MinION Community Event** is now underway at the New York Genome Center https://mcm.nanoporetech.com/ehome/index.php?eventid=143592& Start of the conference <img alt="" src="http://i.imgur.com/f731a0K.jpg?1" style="height:600px; width:800px" /> The …
-
Tool: BioPandas - Working with molecular structures in pandas DataFrames
written by se.raschka 15Hi, all, I was working on a little library over the last few days and wanted to spread the news. It's a simple idea -- …
-
Weird behaviour of local seqlogo/weblogo 2.8.2
written by jth 19Hi! For proper HOMER installation, I have downloaded seqlogo 2.8.2. However, when I try to test it, I have only received weird outputs so far. …
-
MA plots DESeq: strange MA plots
written by VHahaut 120Hello! I am currently analyzing with DESeq2 a group 32 ovine tumors against 3 healthy controls. 80% of the tumor samples are technical replicates. I …
-
Remove Batch Effect From RNAseq with SVAseq and Combat
written by cankutcubuk 19Hi, I need your help and comments to remove batch effect from RNA-Seq data. In total I have almost 1000 RNA-Seq data of different cancer …
-
Which Phred value to use in trimming
written by Zammy 2Hello everyone I have performed quality analysis of RAW miRNA-seq data using FastQC. As a result, I got the following output and the encoding according …
-
Enrichment of ChiP over input comparison
written by marina-orlova 9Hello Could you please advise how can I compare data about ChiP enrichment (I need to count correlation) There are 4 "types" of signal files: …
-
visualizing gene and microarray expression datasets together
written by Abhi 163Hi Folks I am trying to think of ways in which I can display microRNA and gene expression datasets. For now I am doing two …
-
How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
written by newDNASeqer 80I am interested in making 3-D plotting like this below picture for illustrating the subclones/clustered mutations of cancer cells. I have exome-seq data and have …