This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Illumina NGS datasets for normal tissue in particular prostate

Does anyone know of any Illumina whole genome or exome sequecning data, that is publically available, for normal tissue? In particular prostate tissue.

Thanks

next-gen wgs wxs dataset
• 2,988 views • link
updated by Ram Ram • written by dan.brewer dan.brewer

Have you checked the European read archive or SRA/GEO?

• 0 views • link
written by Devon Ryan Devon Ryan

I've had a look at SRA without much luck, but that might be my searching ability.

• 1 views • link
written by dan.brewer dan.brewer

I am just curious. How would you like to use such genomic datasets? The genome in normal prostate cells wouldn't be different from genome in any other cells. Or are you interested in performing some kind of normalization?

• 0 views • link
written by madk00k madk00k

1 answer

I think you could find some at http://www.ncbi.nlm.nih.gov/sra using the search query: "whole genome sequencing AND prostate AND Illumina" or "Exome sequencing AND prostate AND Illumina". Or you can build a query like: "(((Whole genome Sequencing) OR Exome sequencing) AND Prostate) AND Illumina"

• 1 views • link
updated by Ram Ram • written by komal.rathi komal.rathi

Log in to answer this question.

More posts like this