Chip-exo peak-pair distribution heatmap
Hi,
Recently I am working with ChIP-exo data and I seperate out maped Chip-exo reads in two files, forwerd and reverse strand.
I have tried the ngsplot for generating a heatmap of peak-pair distribution of mapped reads, but could not able to get desired output.
Can anyone helpme out to make the peak-pair distribution heatmap from forward and reverse strand mapped reads.
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dnaseiseq
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written
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sourav.por •
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written
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sourav.por •
3 answers
you may use MACS for ChIP-exo https://github.com/taoliu/MACS/issues/15
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Ram
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Ming Tommy Tang
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written
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Ming Tommy Tang
You can also use HOMER to generate the heatmaps. They can tell you the gained, maintained and lost peaks between the conditions.
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Tulip Nandu •
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