Hello, I have been using qualimap to generate stats of the bam files I got, including coverage. Recently, I am getting crashes because there is …

Hello, I recently started using Nextflow and I always get this error: > WARN: Input tuple does not match input set cardinality declared by process …

I have a group of bam files but some of them do not have sample name `SM` in `@RG`, example: sample1.gh37.bam @RG ID:13048 CN:BCCAGSC LB:NA …

Hello, I'm trying to run a QC on my bam files for an RNAseq, but when I run the command: find *U*.bam -exec echo java …

I have two paired-end FASQ files named fq1.fastq and fq2.fastq. Then I use BWA MEM to map these two files with the paired-end mode, like …

Hey everyone, I recently started using BWA-MEM for aligning reads to the human genome. Can anyone tell me why BWA-MEM does not report the true …

Hey, I downloaded a BAM file for chr20 from NCBI (SRR1976036). This is a NA12878 sample. I wanted to do some variant calling with freebayes …

Hi, in my alignments by bwa mem I have found some spots where there is very high number of mismatches. I think these alignments are …

align with bwa mem realign and BQSR with GATK then got the final bam but when I use muTect to call somatic snv，I got an …

<p>Does control-freec can handle it?</p> <p>I found it in a paper?</p> <p>but when using it,i got this error:</p> <p>ERROR: Currently you need to provide a …