convert from plink format into 012 format

Hello

I have a .ped file in plink and would like to convert it into the 012 format (0 hom ancestral), 1 het, 2 dom derived. Is there any way to achieve this with an option in plink?

snp

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updated 4.7 years ago by RNAseqer

• written 12.3 years ago by tim.heinert2 •

2 answers

plink --file [.ped/.map fileset prefix] --recodeA --out [output prefix]

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updated 6.6 years ago by Ram

• written 12.3 years ago by chrchang523

Very helpful!

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written 4.7 years ago by RNAseqer

Use --recodeA

See Additive and dominance components

• 0 views • link

updated 6.6 years ago by Ram

• written 12.3 years ago by zx8754

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