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Comment: Comment: How do we handle TPM values after converting from Ensembl to HUGO genes?
3.1 years ago by Jordan ★ 1.3k
1
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1
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1.7k
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Comment: C: How do you know the best segments in cnvkit after filtering?
4.0 years ago by Jordan ★ 1.3k
0
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1
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1.4k
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Comment: C: The center in scatter plot generated by CNVkit looks off
4.1 years ago by Jordan ★ 1.3k
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1
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1.4k
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Comment: C: The center in scatter plot generated by CNVkit looks off
4.1 years ago by Jordan ★ 1.3k
0
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0
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2.6k
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Comment: C: How are the log2 values in CNVkit .cnr files calculated?
4.1 years ago by Jordan ★ 1.3k
0
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1
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3.2k
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Comment: Comment: Empty SomaticSniper Output Files
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 1.3k
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1
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2.8k
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Comment: A: Convert Phred score 41 to 40
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 1.3k
0
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0
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3.6k
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Comment: C: Find mismatch and INDEL position
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 1.3k
1
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1
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2.7k
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Comment: C: csfasta malformed qualities
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 1.3k
0
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1
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3.7k
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Comment: C: Can anyone tell me the frequency percentage given by varscan2 is for individual
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 1.3k
0
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1
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3.2k
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Comment: C: Empty SomaticSniper Output Files
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 1.3k
0
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0
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3.4k
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Comment: C: Need help using Shrimp2 on paired end SOLiD data.
updated 4.4 years ago by 43k • written 10.0 years ago by ★ 1.3k
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0
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3.4k
views
Comment: C: Need help using Shrimp2 on paired end SOLiD data.
updated 4.4 years ago by 43k • written 10.1 years ago by ★ 1.3k
0
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1
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4.5k
views
Comment: C: Need help understanding read depth for somaticsniper vcf's
updated 4.9 years ago by 43k • written 9.8 years ago by ★ 1.3k
0
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1
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4.5k
views
Comment: C: Need help understanding read depth for somaticsniper vcf's
updated 4.9 years ago by 43k • written 9.8 years ago by ★ 1.3k
0
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1
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4.5k
views
Comment: C: Need help understanding read depth for somaticsniper vcf's
updated 4.9 years ago by 43k • written 9.8 years ago by ★ 1.3k
0
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0
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4.2k
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Comment: C: Input Error Using Varscan2.3
updated 5.3 years ago by 43k • written 10.1 years ago by ★ 1.3k
0
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0
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1.4k
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Comment: C: Tools for asserting matching pairs of samples from the same patient
6.3 years ago by Jordan ★ 1.3k
0
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1
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13k
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Comment: Comment: Add read group to header after samtools merge
updated 2.2 years ago by 43k • written 8.9 years ago by ★ 1.3k
1
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0
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4.3k
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Comment: Comment: TCGA normalized count data of 1000 samples for DGE
updated 15 months ago by 43k • written 9.0 years ago by ★ 1.3k
0
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1
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4.6k
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Comment: C: NOT RESETTING NORMAL error using Varscan2
9.4 years ago by Jordan ★ 1.3k
0
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0
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8.3k
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Comment: C: Mark Duplicates from Picard does not seem to recognize my sorted BAM files.
9.4 years ago by Jordan ★ 1.3k
1
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2
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6.6k
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Comment: C: Can you add a label key to heatscatter plot in R?
9.6 years ago by Jordan ★ 1.3k
0
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1
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5.6k
views
Comment: Comment: Why Is Tophat Reporting Secondary Alignments Even When The Option To Do So Is Tu
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 1.3k
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0
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3.2k
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Comment: Comment: Problem generating VCFs from MuTect variant caller
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 1.3k
0
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1
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9.2k
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Comment: C: Variant callers for Ion Torrent data?
9.7 years ago by Jordan ★ 1.3k
0
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0
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9.2k
views
Comment: Comment: Variant callers for Ion Torrent data?
updated 2.3 years ago by 43k • written 9.7 years ago by ★ 1.3k
0
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1
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6.7k
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Comment: C: Need help understading gene representation in IGV browser
9.8 years ago by Jordan ★ 1.3k
1
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0
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3.6k
views
Comment: C: Find mismatch and INDEL position
9.9 years ago by Jordan ★ 1.3k
0
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0
replies
3.2k
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Comment: C: Unexpected Cufflinks output when using .gtf file as guide
9.9 years ago by Jordan ★ 1.3k
0
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1
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2.4k
views
Comment: C: Is there a way to know which variant caller has been used for calling variants i
10.0 years ago by Jordan ★ 1.3k
0
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0
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8.3k
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Comment: C: Mark Duplicates from Picard does not seem to recognize my sorted BAM files.
10.0 years ago by Jordan ★ 1.3k
0
votes
0
replies
8.3k
views
Comment: C: Mark Duplicates from Picard does not seem to recognize my sorted BAM files.
10.0 years ago by Jordan ★ 1.3k
0
votes
0
replies
3.4k
views
Comment: C: Need help using Shrimp2 on paired end SOLiD data.
10.1 years ago by Jordan ★ 1.3k
0
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1
reply
3.1k
views
Comment: C: Random Variance T-Test In R?
10.2 years ago by Jordan ★ 1.3k
0
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0
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5.2k
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Comment: C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.2 years ago by Jordan ★ 1.3k
0
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1
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5.2k
views
Comment: C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.2 years ago by Jordan ★ 1.3k
0
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1
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5.2k
views
Comment: C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.2 years ago by Jordan ★ 1.3k
0
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1
reply
5.2k
views
Comment: C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.2 years ago by Jordan ★ 1.3k
0
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1
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5.2k
views
Comment: C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.2 years ago by Jordan ★ 1.3k
0
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0
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4.6k
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Comment: C: How To Get The Number Of Samples And Sample Tcga Id'S That Are Reported In Tcga
10.3 years ago by Jordan ★ 1.3k
0
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1
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6.3k
views
Comment: C: How To Include Biological And Technical Replicates While Using Mirdeep2 For Mirn
10.3 years ago by Jordan ★ 1.3k
0
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1
reply
6.0k
views
Comment: C: How To Deal With Technical And Biological Replicates With Tophat2 For Rna-Seq Da
10.5 years ago by Jordan ★ 1.3k
0
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0
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6.4k
views
Comment: C: Error While Running Cuffdiff On Multiple Bam Files Of A Group
10.5 years ago by Jordan ★ 1.3k
0
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1
reply
6.4k
views
Comment: C: Error While Running Cuffdiff On Multiple Bam Files Of A Group
10.5 years ago by Jordan ★ 1.3k
0
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0
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4.8k
views
Comment: C: How To Identify Large Arrangements And Transposable Elements In Ngs Data?
10.6 years ago by Jordan ★ 1.3k
0
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0
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3.6k
views
Comment: C: Problem Generating Copy Number Variants Using Varscan2.
10.7 years ago by Jordan ★ 1.3k
0
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0
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3.5k
views
Comment: C: Why Is The Variant File Produced By Samtools So Large? It Is About ~34G.
10.8 years ago by Jordan ★ 1.3k
0
votes
1
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7.9k
views
Comment: C: Add Dp Tag To Genotype Field Of Vcf File
10.8 years ago by Jordan ★ 1.3k
1
vote
0
replies
2.5k
views
Comment: C: Protein Count Matrix In Perl
10.9 years ago by Jordan ★ 1.3k
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