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936
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Divide isoform expression by gene expression to calculate splicing ratios
RNA-Seq Assembly
4.8 years ago by waqaskhokhar999 ▴ 160
1
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1
reply
2.1k
views
Gene feature information missing in Stringtie merged assembly
RNA-Seq Assembly gtf
updated 4.8 years ago by 8.6k • written 4.8 years ago by ▴ 160
4
votes
3
replies
4.8k
views
Increase height of box plots in ggplot
R ggplot2 boxplot
updated 4.8 years ago by 35k • written 4.8 years ago by ▴ 160
0
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0
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4.8k
views
Comment: C: Increase height of box plots in ggplot
4.8 years ago by waqaskhokhar999 ▴ 160
3
votes
7
replies
3.0k
views
Multiple reference alleles in vcf file
SNP
updated 4.8 years ago by ★ 3.0k • written 4.8 years ago by ▴ 160
0
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1
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3.0k
views
Comment: C: Multiple reference alleles in vcf file
4.8 years ago by waqaskhokhar999 ▴ 160
1
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10
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1.4k
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Alignment of single-ended library distributed among different lanes
RNA-Seq alignment
updated 4.9 years ago by 20 • written 5.2 years ago by ▴ 160
0
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2
replies
1.1k
views
Plot association between genotype and splicing ratio using ggplot
SNP RNA-Seq ggplot
4.9 years ago by waqaskhokhar999 ▴ 160
0
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1
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1.7k
views
Comment: A: Running prepare.py on remote server
4.9 years ago by waqaskhokhar999 ▴ 160
6
votes
3
replies
1.2k
views
Numeric genotype to letters
SNP
updated 4.9 years ago by 13k • written 4.9 years ago by ▴ 160
2
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3
replies
1.1k
views
Overlap between ranges
RNA-Seq
updated 4.9 years ago by ★ 2.2k • written 4.9 years ago by ▴ 160
0
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1
reply
1.7k
views
Memory error during imputation of full genome data for multiple samples
SNP imputation beagle
updated 4.9 years ago by • 0 • written 4.9 years ago by ▴ 160
0
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1
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3.0k
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Comment: C: Convert the genotype format from numeric to letters
4.9 years ago by waqaskhokhar999 ▴ 160
0
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1
reply
3.0k
views
Comment: C: Convert the genotype format from numeric to letters
4.9 years ago by waqaskhokhar999 ▴ 160
0
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0
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4.4k
views
Comment: C: Convert numeric alleles into letters
4.9 years ago by waqaskhokhar999 ▴ 160
1
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2
replies
1.4k
views
Extract multi exonic genes from gtf files
RNA-Seq gtf exon
5.0 years ago by waqaskhokhar999 ▴ 160
0
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0
replies
1.2k
views
Comment: C: Filter vaiants having no AF information
updated 5.0 years ago by 16k • written 5.0 years ago by ▴ 160
0
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1
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1.8k
views
Comment: C: Estimate percentage of alternative splicing
5.0 years ago by waqaskhokhar999 ▴ 160
2
votes
6
replies
1.8k
views
Estimate percentage of alternative splicing
RNA-Seq Alternative splicing
updated 5.0 years ago by 8.2k • written 5.0 years ago by ▴ 160
0
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1
reply
1.2k
views
Comment: C: Filter vaiants having no AF information
5.0 years ago by waqaskhokhar999 ▴ 160
0
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4
replies
1.2k
views
Filter vaiants having no AF information
snp minor allele frequency vcf
5.0 years ago by waqaskhokhar999 ▴ 160
0
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1
reply
5.3k
views
Comment: C: Salmon installation error
5.0 years ago by waqaskhokhar999 ▴ 160
1
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1
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5.3k
views
Answer: A: Salmon installation error
5.0 years ago by waqaskhokhar999 ▴ 160
0
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1
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2.4k
views
Comment: C: Stringtie merge assembly with extra transcripts
5.0 years ago by waqaskhokhar999 ▴ 160
2
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3
replies
2.4k
views
Stringtie merge assembly with extra transcripts
RNA-Seq Assembly stringtie-merge
updated 5.0 years ago by ▴ 410 • written 5.0 years ago by ▴ 160
4
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1
reply
2.5k
views
gffcompare class code 'j'
RNA-Seq gffcompare
updated 5.0 years ago by 141k • written 5.0 years ago by ▴ 160
0
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1
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5.0k
views
Comment: Comment: How can i extract FPKM from my GTF file which is created by stringtie?
updated 2.7 years ago by 43k • written 5.0 years ago by ▴ 160
0
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1
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5.0k
views
Comment: C: How can i extract FPKM from my GTF file which is created by stringtie?
5.0 years ago by waqaskhokhar999 ▴ 160
0
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1
reply
5.1k
views
Comment: C: TPM from StringTie
5.0 years ago by waqaskhokhar999 ▴ 160
0
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1
reply
1.4k
views
Comment: C: Alignment of single-ended library distributed among different lanes
5.2 years ago by waqaskhokhar999 ▴ 160
0
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1
reply
1.4k
views
Comment: C: Alignment of single-ended library distributed among different lanes
5.2 years ago by waqaskhokhar999 ▴ 160
0
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1
reply
1.4k
views
Comment: C: Alignment of single-ended library distributed among different lanes
5.2 years ago by waqaskhokhar999 ▴ 160
0
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1
reply
1.4k
views
Comment: C: Alignment of single-ended library distributed among different lanes
5.2 years ago by waqaskhokhar999 ▴ 160
0
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0
replies
1.4k
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Answer: A: Cut off for DE genes
5.5 years ago by waqaskhokhar999 ▴ 160
0
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1
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4.9k
views
Comment: C: Bowtie indexes for custom reference genome
5.5 years ago by waqaskhokhar999 ▴ 160
2
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0
replies
4.9k
views
Answer: A: Bowtie indexes for custom reference genome
5.5 years ago by waqaskhokhar999 ▴ 160
0
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3
replies
3.4k
views
Comment: C: limitations of Edge R or DEseq
5.5 years ago by waqaskhokhar999 ▴ 160
0
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1
reply
3.4k
views
Answer: A: limitations of Edge R or DEseq
5.5 years ago by waqaskhokhar999 ▴ 160
0
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0
replies
2.2k
views
Comment: C: Trinity for single end library distributed among different lanes.
5.5 years ago by waqaskhokhar999 ▴ 160
0
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2
replies
2.2k
views
Trinity for single end library distributed among different lanes.
RNA-Seq Assembly
updated 5.5 years ago by 35k • written 5.5 years ago by ▴ 160
0
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0
replies
39k
views
Comment: C: Pca From Vcf Files
5.5 years ago by waqaskhokhar999 ▴ 160
0
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0
replies
3.1k
views
Comment: C: SNPRelate: how to give specific color to a population in PCA plot
5.5 years ago by waqaskhokhar999 ▴ 160
0
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1
reply
4.1k
views
Answer: A: stringtie and alternative splicing
5.5 years ago by waqaskhokhar999 ▴ 160
0
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0
replies
1.9k
views
Alternative splicing from stringTie
RNA-Seq
5.5 years ago by waqaskhokhar999 ▴ 160
0
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2
replies
2.1k
views
Infer direction of paired end data
RNA-Seq
updated 5.5 years ago by 100k • written 5.5 years ago by ▴ 160
0
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0
replies
183k
views
Comment: C: How to download raw sequence data from GEO/SRA
6.5 years ago by waqaskhokhar999 ▴ 160
0
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2
replies
183k
views
Comment: C: How to download raw sequence data from GEO/SRA
updated 6.5 years ago by 141k • written 6.5 years ago by ▴ 160
5
votes
1
reply
1.9k
views
Alternative splicing events in transcriptomic data
RNA-Seq
updated 8.1 years ago by 13k • written 8.1 years ago by ▴ 160
0
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0
replies
2.9k
views
Answer: A: Alternative Splice Reads
8.1 years ago by waqaskhokhar999 ▴ 160
99 results • Page 2 of 2
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